STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2571PFAM: 6-phosphogluconate dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: reh:H16_B0466 D-3-phosphoglycerate dehydrogenase. (319 aa)    
Predicted Functional Partners:
Xaut_4126
Glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rpd:RPD_0217 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
0.930
Xaut_2368
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bpd:BURPS668_2260 hydroxypyruvate isomerase; Belongs to the hyi family.
 
 
  0.927
Xaut_1534
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bxe:Bxe_B0983 putative 2-hydroxyacid dehydrogenase.
 
  
0.926
Xaut_3104
Hydroxypyruvate reductase; PFAM: MOFRL domain protein; KEGG: acr:Acry_2372 hydroxypyruvate reductase.
    
 0.910
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
     
 0.910
Xaut_1869
PFAM: FAD linked oxidase domain protein; KEGG: mlo:mlr6919 glycolate oxidase subunits GlcE.
  
 
 0.909
Xaut_1870
PFAM: FAD linked oxidase domain protein; KEGG: swi:Swit_0991 D-lactate dehydrogenase (cytochrome).
  
 
 0.909
Xaut_2473
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bov:BOV_0302 hydrolase, haloacid dehalogenase-like family.
    
 0.909
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.909
Xaut_4762
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rde:RD1_1442 hydrolase, putative.
    
 0.909
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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