STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_2637PFAM: NUDIX hydrolase; KEGG: rpc:RPC_3722 nucleoside diphosphate pyrophosphatase. (217 aa)    
Predicted Functional Partners:
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
    
 0.910
Xaut_1929
PFAM: phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bra:BRADO0757 putative phosphomannomutase/phosphoglucomutase (PMM / PGM).
    
 0.903
Xaut_2636
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bra:BRADO1006 putative oligopeptide transport protein (ABC superfamily, atp_bind); Belongs to the ABC transporter superfamily.
 
    0.820
Xaut_2635
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_3532 binding-protein-dependent transport systems inner membrane component.
 
     0.794
Xaut_2634
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nwi:Nwi_0290 binding-protein-dependent transport systems inner membrane component.
 
     0.792
Xaut_2632
PFAM: extracellular solute-binding protein family 5; KEGG: nha:Nham_0378 extracellular solute-binding protein, family 5.
 
     0.673
Xaut_2633
PFAM: extracellular solute-binding protein family 5; KEGG: rpe:RPE_3766 extracellular solute-binding protein, family 5.
 
     0.656
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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