STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oiaTRibulose-bisphosphate carboxylase; Involved in catabolism of D-apiose. Catalyzes the conversion of 3-oxo-isoapionate 4-phosphate to 3-phosphoglycerate and glycolate. Belongs to the RuBisCO large chain family. (414 aa)    
Predicted Functional Partners:
Xaut_1917
PFAM: ribulose bisphosphate carboxylase small chain; KEGG: rsh:Rsph17029_2940 ribulose-bisphosphate carboxylase.
 
 0.995
Xaut_2923
PFAM: type III effector Hrp-dependent outers; KEGG: pol:Bpro_0094 type III effector Hrp-dependent outers.
 
   
 0.951
Xaut_1914
PFAM: phosphoribulokinase/uridine kinase; KEGG: rpc:RPC_2898 phosphoribulokinase.
 
 
 0.947
cbbL
Ribulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
  
  
 
0.926
Xaut_2473
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bov:BOV_0302 hydrolase, haloacid dehalogenase-like family.
 
  
 0.923
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.917
pgk
PFAM: phosphoglycerate kinase; KEGG: rpd:RPD_4314 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.913
Xaut_4762
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rde:RD1_1442 hydrolase, putative.
    
 0.909
Xaut_2925
PFAM: Semialdehyde dehydrogenase NAD - binding; KEGG: pol:Bpro_0087 hypothetical protein.
 
   
 0.895
Xaut_1041
KEGG: aav:Aave_4326 2,3-diketo-5-methylthio-1-phosphopentane phosphatase.
  
  
 0.760
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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