node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Xaut_0294 | rplA | Xaut_0294 | Xaut_3361 | PFAM: protein of unknown function DUF448; KEGG: rpe:RPE_0197 protein of unknown function DUF448. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.995 |
Xaut_0294 | rplC | Xaut_0294 | Xaut_1679 | PFAM: protein of unknown function DUF448; KEGG: rpe:RPE_0197 protein of unknown function DUF448. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.997 |
Xaut_0294 | rplD | Xaut_0294 | Xaut_1680 | PFAM: protein of unknown function DUF448; KEGG: rpe:RPE_0197 protein of unknown function DUF448. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.997 |
Xaut_0294 | rplJ | Xaut_0294 | Xaut_3362 | PFAM: protein of unknown function DUF448; KEGG: rpe:RPE_0197 protein of unknown function DUF448. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.997 |
Xaut_0294 | rplL | Xaut_0294 | Xaut_3363 | PFAM: protein of unknown function DUF448; KEGG: rpe:RPE_0197 protein of unknown function DUF448. | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.629 |
Xaut_0294 | rplO | Xaut_0294 | Xaut_4779 | PFAM: protein of unknown function DUF448; KEGG: rpe:RPE_0197 protein of unknown function DUF448. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.997 |
Xaut_0294 | rplR | Xaut_0294 | Xaut_4782 | PFAM: protein of unknown function DUF448; KEGG: rpe:RPE_0197 protein of unknown function DUF448. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.997 |
Xaut_0294 | rplV | Xaut_0294 | Xaut_1684 | PFAM: protein of unknown function DUF448; KEGG: rpe:RPE_0197 protein of unknown function DUF448. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.997 |
Xaut_0294 | rplW | Xaut_0294 | Xaut_1681 | PFAM: protein of unknown function DUF448; KEGG: rpe:RPE_0197 protein of unknown function DUF448. | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.997 |
Xaut_0294 | rplX | Xaut_0294 | Xaut_4787 | PFAM: protein of unknown function DUF448; KEGG: rpe:RPE_0197 protein of unknown function DUF448. | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.996 |
rplA | Xaut_0294 | Xaut_3361 | Xaut_0294 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | PFAM: protein of unknown function DUF448; KEGG: rpe:RPE_0197 protein of unknown function DUF448. | 0.995 |
rplA | rplC | Xaut_3361 | Xaut_1679 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.992 |
rplA | rplD | Xaut_3361 | Xaut_1680 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.994 |
rplA | rplJ | Xaut_3361 | Xaut_3362 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.997 |
rplA | rplL | Xaut_3361 | Xaut_3363 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.995 |
rplA | rplO | Xaut_3361 | Xaut_4779 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.995 |
rplA | rplR | Xaut_3361 | Xaut_4782 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.996 |
rplA | rplV | Xaut_3361 | Xaut_1684 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.995 |
rplA | rplW | Xaut_3361 | Xaut_1681 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.995 |
rplA | rplX | Xaut_3361 | Xaut_4787 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.992 |