STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_4742PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA1726 putative oxidoreductase. (344 aa)    
Predicted Functional Partners:
Xaut_4743
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pol:Bpro_0361 cupin 2, conserved barrel.
       0.789
Xaut_4740
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_0358 short-chain dehydrogenase/reductase SDR.
 
   0.717
Xaut_4741
PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B5853 protein of unknown function DUF849, prokaryotic.
       0.642
Xaut_4739
PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: ret:RHE_CH02298 probable catechol 1,2-dioxygenase protein.
 
     0.627
Xaut_2758
TIGRFAM: Alcohol dehydrogenase. zinc-binding type 1; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gvi:gll2260 probable oxidoreductase; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
 
    0.603
Xaut_1258
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpc:RPC_2107 alcohol dehydrogenase, zinc-binding.
 
    0.515
dctA-2
Sodium:dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
    0.422
Xaut_1010
PFAM: condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mva:Mvan_1003 beta-ketoacyl synthase.
  
 
0.403
Xaut_1545
PFAM: amine oxidase; Methyltransferase type 11; KEGG: bja:bll5408 hypothetical protein.
 
  
 0.401
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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