STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp36Ubiquitin carboxyl-terminal hydrolase. (890 aa)    
Predicted Functional Partners:
suds3
Sin3 histone deacetylase corepressor complex component SDS3-like protein.
    
 0.654
ENSCMIP00000010144
Uncharacterized protein.
     
 0.588
LOC103191244
Uncharacterized protein.
     
 0.588
brms1l
Breast cancer metastasis-suppressor 1-like protein-A.
    
  0.562
trip12
Putative E3 ubiquitin-protein ligase TRIP12.
      
 0.553
usp10
Ubiquitin carboxyl-terminal hydrolase.
     
0.520
LOC103181515
Rhodanese domain-containing protein.
    
 0.494
ENSCMIP00000047442
Rhodanese domain-containing protein.
    
 0.494
ENSCMIP00000024973
Rhodanese domain-containing protein.
    
 0.471
dhx58
Uncharacterized protein.
     
 0.456
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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