A0A4P9XJ04 protein (Thamnocephalis sphaerospora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4P9XJ04

Multi protein bridging factor 1-domain-containing protein. (147 aa)

Predicted Functional Partners:

A0A4P9XTG3

0.935

A0A4P9XJ69

0.926

A0A4P9XVC8

0.922

A0A4P9XW82

0.921

A0A4P9XHC9

0.918

A0A4P9XPS1

0.917

A0A4P9XVA1

0.916

A0A4P9XNY3

0.914

A0A4P9XKL9

0.913

A0A4P9XLG8

0.912

Your Current Organism:

Thamnocephalis sphaerospora

NCBI taxonomy Id: 78915
Other names: T. sphaerospora

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4P9XHC9	A0A4P9XJ04	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	Multi protein bridging factor 1-domain-containing protein.	0.918
A0A4P9XHC9	A0A4P9XJ69	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.998
A0A4P9XHC9	A0A4P9XKL9	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
A0A4P9XHC9	A0A4P9XLG8	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	Ribosomal protein S19-domain-containing protein; Belongs to the universal ribosomal protein uS19 family.	0.999
A0A4P9XHC9	A0A4P9XNY3	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	Plectin/S10 domain-containing protein.	0.999
A0A4P9XHC9	A0A4P9XPS1	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	Putative 40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
A0A4P9XHC9	A0A4P9XTG3	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S20.	0.999
A0A4P9XHC9	A0A4P9XVA1	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	Ribosomal protein S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
A0A4P9XHC9	A0A4P9XVC8	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	Ribosomal L29 protein-domain-containing protein.	0.999
A0A4P9XHC9	A0A4P9XW82	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	G-protein complex beta subunit.	0.999
A0A4P9XJ04	A0A4P9XHC9	Multi protein bridging factor 1-domain-containing protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.918
A0A4P9XJ04	A0A4P9XJ69	Multi protein bridging factor 1-domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.926
A0A4P9XJ04	A0A4P9XKL9	Multi protein bridging factor 1-domain-containing protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.913
A0A4P9XJ04	A0A4P9XLG8	Multi protein bridging factor 1-domain-containing protein.	Ribosomal protein S19-domain-containing protein; Belongs to the universal ribosomal protein uS19 family.	0.912
A0A4P9XJ04	A0A4P9XNY3	Multi protein bridging factor 1-domain-containing protein.	Plectin/S10 domain-containing protein.	0.914
A0A4P9XJ04	A0A4P9XPS1	Multi protein bridging factor 1-domain-containing protein.	Putative 40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.917
A0A4P9XJ04	A0A4P9XTG3	Multi protein bridging factor 1-domain-containing protein.	40S ribosomal protein S20.	0.935
A0A4P9XJ04	A0A4P9XVA1	Multi protein bridging factor 1-domain-containing protein.	Ribosomal protein S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.916
A0A4P9XJ04	A0A4P9XVC8	Multi protein bridging factor 1-domain-containing protein.	Ribosomal L29 protein-domain-containing protein.	0.922
A0A4P9XJ04	A0A4P9XW82	Multi protein bridging factor 1-domain-containing protein.	G-protein complex beta subunit.	0.921