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USB1 protein (Latimeria chalumnae) - STRING interaction network
"USB1" - U6 snRNA biogenesis 1 in Latimeria chalumnae
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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USB1U6 snRNA biogenesis 1; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (289 aa)    
Predicted Functional Partners:
CWF19L2
CWF19-like 2, cell cycle control (S. pombe) (905 aa)
     
      0.598
EAPP
E2F-associated phosphoprotein (297 aa)
       
      0.590
DHX35
DEAH (Asp-Glu-Ala-His) box polypeptide 35 (705 aa)
       
      0.590
SYF2
SYF2 homolog, RNA splicing factor (S. cerevisiae) (238 aa)
       
      0.590
BUD31
BUD31 homolog (S. cerevisiae) (238 aa)
       
      0.590
PPIE
Peptidylprolyl isomerase E (cyclophilin E); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (302 aa)
       
      0.590
WDR83
WD repeat domain 83 (316 aa)
       
      0.590
GPATCH1
G patch domain containing 1 (910 aa)
       
      0.590
XAB2
XPA binding protein 2 (848 aa)
       
      0.590
CRNKL1
Crooked neck pre-mRNA splicing factor-like 1 (Drosophila) (684 aa)
       
      0.590
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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