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SLC6A13 protein (Latimeria chalumnae) - STRING interaction network
"SLC6A13" - Transporter in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC6A13Transporter ; Belongs to the sodium-neurotransmitter symporter (SNF) (TC 2.A.22) family (605 aa)    
Predicted Functional Partners:
GNL3L
Guanine nucleotide binding protein-like 3 (nucleolar)-like (331 aa)
     
   
  0.801
TMEM187
Transmembrane protein 187 (257 aa)
           
  0.785
TFE3
Transcription factor binding to IGHM enhancer 3 (502 aa)
           
  0.782
TNPO3
Transportin 3 (771 aa)
           
  0.655
EML5
Echinoderm microtubule associated protein like 5 (1802 aa)
     
   
  0.651
CRTC3
CREB regulated transcription coactivator 3 (642 aa)
           
  0.632
ELAVL2
ELAV-like protein; ELAV like neuron-specific RNA binding protein 2; Belongs to the RRM elav family (387 aa)
     
   
  0.616
MECP2
Methyl CpG binding protein 2 (459 aa)
           
  0.568
GPHN
Gephyrin (777 aa)
     
   
  0.559
TOP3B
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (863 aa)
     
   
  0.517
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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