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STRINGSTRING
ENSLACG00000000135 protein (Latimeria chalumnae) - STRING interaction network
"ENSLACG00000000135" - Uncharacterized protein in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLACG00000000135Uncharacterized protein (89 aa)    
Predicted Functional Partners:
YTHDC2
YTH domain containing 2 (1429 aa)
     
 
  0.670
PRPF40B
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) (894 aa)
     
 
  0.600
PRPF40A
PRP40 pre-mRNA processing factor 40 homolog A (yeast) (902 aa)
     
 
  0.600
DDX55
RNA helicase; DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 (597 aa)
     
 
  0.505
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA (367 aa)
     
 
  0.495
RALY
RALY heterogeneous nuclear ribonucleoprotein (283 aa)
       
 
0.495
PRPF19
pre-mRNA processing factor 19 (504 aa)
     
 
  0.485
CWF19L2
CWF19-like 2, cell cycle control (S. pombe) (905 aa)
     
      0.482
SNRPG
Small nuclear ribonucleoprotein polypeptide G (76 aa)
     
 
  0.480
EIF3E
Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (446 aa)
     
 
  0.478
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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