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BCMO1 protein (Latimeria chalumnae) - STRING interaction network
"BCMO1" - Beta-carotene 15,15'-monooxygenase 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCMO1Beta-carotene 15,15’-monooxygenase 1 (531 aa)    
Predicted Functional Partners:
AOX1
Aldehyde oxidase 1 (1070 aa)
         
  0.926
ENSLACG00000014384
Uncharacterized protein (284 aa)
     
 
  0.911
RDH12
Retinol dehydrogenase 12 (all-trans/9-cis/11-cis) (320 aa)
 
 
 
  0.910
DHRS3
Dehydrogenase/reductase (SDR family) member 3 (303 aa)
     
 
  0.909
RDH10
Retinol dehydrogenase 10 (all-trans) (348 aa)
     
 
  0.909
ENSLACG00000001894
Uncharacterized protein (319 aa)
 
 
 
  0.909
ENSLACG00000016107
Uncharacterized protein (244 aa)
         
  0.908
ENSLACG00000014000
Uncharacterized protein (315 aa)
         
  0.908
RDH8
Retinol dehydrogenase 8 (all-trans) (317 aa)
         
  0.908
ALDH1A1
Aldehyde dehydrogenase 1 family, member A1 (514 aa)
     
 
  0.906
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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