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LSM14A protein (Latimeria chalumnae) - STRING interaction network
LSM14A, SCD6 homolog A (S. cerevisiae) in Latimeria chalumnae
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM14ALSM14A, SCD6 homolog A (S. cerevisiae) (483 aa)    
Predicted Functional Partners:
DCP2
DCP2 decapping enzyme homolog (S. cerevisiae) (402 aa)
     
 
  0.917
DDX6
DEAD (Asp-Glu-Ala-Asp) box helicase 6 (485 aa)
     
 
  0.835
ENSLACG00000015214
Uncharacterized protein (480 aa)
     
 
  0.822
XRN1
5’-3’ exoribonuclease 1 (1737 aa)
     
   
  0.681
EDC3
Enhancer of mRNA decapping 3 homolog (S. cerevisiae) (513 aa)
     
 
  0.663
EIF4E
Eukaryotic translation initiation factor 4E (217 aa)
     
 
  0.658
DCP1B
DCP1 decapping enzyme homolog B (S. cerevisiae) (600 aa)
     
 
  0.645
DCP1A
Decapping mRNA 1A (597 aa)
     
 
  0.645
ENSLACG00000015230
Uncharacterized protein (219 aa)
     
 
  0.643
NUDT1
Nudix (nucleoside diphosphate linked moiety X)-type motif 1 (107 aa)
     
 
  0.625
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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