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LSM14A protein (Latimeria chalumnae) - STRING interaction network
LSM14A, mRNA processing body assembly factor in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM14ALSM14A, mRNA processing body assembly factor; LSM14 homolog Aa (SCD6, S. cerevisiae) (483 aa)    
Predicted Functional Partners:
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1 (973 aa)
     
 
  0.977
DDX6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family (485 aa)
     
 
  0.954
DCP2
DCP2 decapping enzyme homolog (S. cerevisiae) (402 aa)
     
 
  0.939
ENSLACG00000015214
DEAD (Asp-Glu-Ala-Asp) box helicase 61; Si-ch211-175g6.7; Belongs to the DEAD box helicase family (480 aa)
     
 
  0.925
KIAA0355
KIAA0355 (1082 aa)
           
  0.902
MPHOSPH6
M-phase phosphoprotein 6 (162 aa)
     
   
  0.900
PATL1
PAT1 homolog 1, processing body mRNA decay factor; Protein associated with topoisomerase II homolog 1 (yeast) (723 aa)
     
 
  0.899
EDC3
Enhancer of mRNA decapping 3 homolog (S. cerevisiae) (513 aa)
     
 
  0.856
HSD17B2
Hydroxysteroid (17-beta) dehydrogenase 2; Belongs to the short-chain dehydrogenases/reductases (SDR) family (298 aa)
           
  0.839
WTIP
Wilms tumor 1 interacting protein (696 aa)
           
  0.824
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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