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STRINGSTRING
ATG16L1 protein (Latimeria chalumnae) - STRING interaction network
"ATG16L1" - Autophagy related 16-like 1 (S. cerevisiae) in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG16L1Autophagy related 16-like 1 (S. cerevisiae) (597 aa)    
Predicted Functional Partners:
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation (275 aa)
     
 
  0.987
ATG3
Autophagy-related protein 3; APG3 autophagy 3-like (314 aa)
     
 
  0.975
ATG13
ATG13 autophagy related 13 homolog (S. cerevisiae) (554 aa)
     
 
  0.939
ATG12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation (145 aa)
       
 
  0.918
ULK1
Unc-51-like kinase 2 (C. elegans) (1046 aa)
       
 
  0.901
NOD2
Nucleotide-binding oligomerization domain containing 2 (854 aa)
       
 
  0.898
ATG101
Autophagy related 101 (218 aa)
     
 
  0.882
ENSLACG00000009584
Uncharacterized protein (241 aa)
     
 
  0.862
RB1CC1
RB1-inducible coiled-coil 1 (1296 aa)
     
 
  0.862
MAP1LC3A
Microtubule-associated protein 1 light chain 3 alpha; Belongs to the ATG8 family (121 aa)
     
 
  0.840
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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