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MTMR12 protein (Latimeria chalumnae) - STRING interaction network
"MTMR12" - Myotubularin related protein 12 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTMR12Myotubularin related protein 12 (552 aa)    
Predicted Functional Partners:
NPLOC4
Nuclear protein localization 4 homolog (S. cerevisiae) (612 aa)
     
      0.607
C22orf28
Chromosome 22 open reading frame 28; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3’,5’- phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs (505 aa)
     
      0.593
UFD1L
Ubiquitin fusion degradation 1 like (yeast) (302 aa)
       
      0.590
SYNJ2
Synaptojanin 2 (1075 aa)
     
 
  0.588
SYNJ1
Synaptojanin 1 (1563 aa)
     
 
  0.588
CMTM6
CKLF-like MARVEL transmembrane domain containing 6 (186 aa)
     
   
  0.491
NPHP1
Nephronophthisis 1 (juvenile) (561 aa)
           
  0.422
SBF2
SET binding factor 2 (1851 aa)
     
 
0.422
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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