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VPS4B protein (Latimeria chalumnae) - STRING interaction network
"VPS4B" - Vacuolar protein sorting 4 homolog B (S. cerevisiae) in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS4BVacuolar protein sorting 4 homolog B (S. cerevisiae) (448 aa)    
Predicted Functional Partners:
VTA1
Vps20-associated 1 homolog (S. cerevisiae) (43 aa)
     
  0.989
CHMP1A
Charged multivesicular body protein 1A (206 aa)
     
  0.987
CHMP1B
Charged multivesicular body protein 1B (161 aa)
     
  0.987
CHMP6
Charged multivesicular body protein 6 (146 aa)
     
  0.984
CHMP2A
Charged multivesicular body protein 2A (295 aa)
     
  0.983
CHMP5
Charged multivesicular body protein 5 (220 aa)
     
  0.980
CHMP2B
Charged multivesicular body protein 2B (214 aa)
     
  0.979
CHMP4C
Charged multivesicular body protein 4C (240 aa)
     
  0.971
CHMP4B
Charged multivesicular body protein 4B (225 aa)
     
  0.971
CHMP4A
Charged multivesicular body protein 4A (221 aa)
     
  0.961
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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