STRINGSTRING
SNRNP200 protein (Latimeria chalumnae) - STRING interaction network
"SNRNP200" - Small nuclear ribonucleoprotein 200kDa in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP200Small nuclear ribonucleoprotein 200kDa (U5) (1764 aa)    
Predicted Functional Partners:
PRPF8
PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) (2213 aa)
     
  0.992
PRPF19
PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) (504 aa)
     
  0.984
CDC40
Cell division cycle 40 homolog (S. cerevisiae) (574 aa)
     
  0.982
DHX8
DEAH (Asp-Glu-Ala-His) box polypeptide 8 (1211 aa)
     
  0.981
CDC5L
CDC5 cell division cycle 5-like (S. pombe) (803 aa)
     
  0.980
XAB2
XPA binding protein 2 (848 aa)
     
  0.979
SF3B1
Splicing factor 3b, subunit 1, 155kDa (1308 aa)
     
  0.974
BUD31
BUD31 homolog (S. cerevisiae) (238 aa)
     
  0.973
PRPF3
PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) (631 aa)
     
  0.972
PRPF4
PRP4 pre-mRNA processing factor 4 homolog (yeast) (523 aa)
     
  0.971
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
Server load: low (12%) [HD]