STRINGSTRING
CPSF1 protein (Latimeria chalumnae) - STRING interaction network
"CPSF1" - Cleavage and polyadenylation specific factor 1, 160kDa in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPSF1Cleavage and polyadenylation specific factor 1, 160kDa (1387 aa)    
Predicted Functional Partners:
CPSF2
Cleavage and polyadenylation specific factor 2, 100kDa (782 aa)
     
  0.998
CPSF3
Cleavage and polyadenylation specific factor 3, 73kDa (689 aa)
     
  0.997
CPSF4
Cleavage and polyadenylation specific factor 4, 30kDa (270 aa)
     
  0.996
CPSF4L
Cleavage and polyadenylation specific factor 4-like (245 aa)
     
  0.995
FIP1L1
FIP1 like 1 (S. cerevisiae) (532 aa)
     
  0.994
YTHDC2
YTH domain containing 2 (1429 aa)
     
  0.992
ENSLACG00000011944
Uncharacterized protein (504 aa)
     
  0.992
WDR33
WD repeat domain 33 (1338 aa)
     
  0.992
WDR82
WD repeat domain 82 (603 aa)
     
  0.989
CPSF3L
Cleavage and polyadenylation specific factor 3-like (602 aa)
     
  0.981
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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