STRINGSTRING
VCL protein (Latimeria chalumnae) - STRING interaction network
"VCL" - Vinculin in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VCLVinculin (832 aa)    
Predicted Functional Partners:
TLN2
Talin 2 (1962 aa)
     
  0.997
TLN1
Talin 1 (2546 aa)
     
  0.997
PXN
Paxillin (1112 aa)
     
  0.993
CTNNA1
Catenin (cadherin-associated protein), alpha 1, 102kDa (911 aa)
     
0.989
ACTN1
Actinin, alpha 1 (890 aa)
     
  0.971
ACTN3
Actinin, alpha 3 (907 aa)
     
  0.971
ACTN2
Actinin, alpha 2 (879 aa)
     
  0.971
TGFB1I1
Transforming growth factor beta 1 induced transcript 1 (586 aa)
     
  0.970
LPXN
Leupaxin (367 aa)
     
  0.970
ENSLACG00000014104
Uncharacterized protein (380 aa)
     
  0.966
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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