STRINGSTRING
SEPHS1 protein (Latimeria chalumnae) - STRING interaction network
"SEPHS1" - Selenophosphate synthetase 1 in Latimeria chalumnae
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEPHS1Selenophosphate synthetase 1 (392 aa)    
Predicted Functional Partners:
SEPSECS
Sep (O-phosphoserine) tRNA-Sec (selenocysteine) tRNA synthase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis (492 aa)
   
 
  0.969
TXNRD1
Thioredoxin reductase 1 (359 aa)
     
 
  0.943
TXNRD2
Thioredoxin reductase 2 (512 aa)
     
 
  0.943
TXNRD3
Thioredoxin reductase 3 (598 aa)
     
 
  0.943
UMPS
Uridine monophosphate synthetase (290 aa)
   
 
  0.929
SCLY
Selenocysteine lyase (381 aa)
     
 
  0.921
ACADS
acyl-CoA dehydrogenase, C-2 to C-3 short chain (410 aa)
       
      0.806
ACADSB
acyl-CoA dehydrogenase, short/branched chain (453 aa)
       
      0.806
SEPHS2
Selenophosphate synthetase 2 (338 aa)
   
   
 
0.801
ZNF830
Zinc finger protein 830 (240 aa)
     
      0.733
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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