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TRIP13 protein (Latimeria chalumnae) - STRING interaction network
"TRIP13" - Thyroid hormone receptor interactor 13 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIP13Thyroid hormone receptor interactor 13 (432 aa)    
Predicted Functional Partners:
UBA52
Uncharacterized protein (128 aa)
     
  0.742
KXD1
Ubiquitin A-52 residue ribosomal protein fusion product 1 (231 aa)
     
  0.740
UFD1L
Ubiquitin fusion degradation 1 like (yeast) (302 aa)
     
  0.738
NPLOC4
Nuclear protein localization 4 homolog (S. cerevisiae) (612 aa)
     
  0.726
RFC4
Replication factor C (activator 1) 4, 37kDa (360 aa)
     
  0.714
RAD51C
RAD51 homolog C (S. cerevisiae) (368 aa)
   
 
  0.697
CCNA1
Cyclin A1 (433 aa)
     
 
  0.693
CCNA2
Cyclin A2 (447 aa)
     
 
  0.662
DERL2
Derlin 2; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome (239 aa)
     
  0.649
DERL3
Derlin 3; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome (203 aa)
     
  0.649
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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