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CLN5 protein (Latimeria chalumnae) - STRING interaction network
"CLN5" - Ceroid-lipofuscinosis, neuronal 5 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLN5Ceroid-lipofuscinosis, neuronal 5 (297 aa)    
Predicted Functional Partners:
CLN6
CLN6, transmembrane ER protein; Ceroid-lipofuscinosis, neuronal 6, late infantile, variant (317 aa)
     
   
  0.890
SGSH
N-sulfoglucosamine sulfohydrolase (sulfamidase) (502 aa)
           
  0.810
CLN8
CLN8, transmembrane ER and ERGIC protein; Ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) (294 aa)
           
  0.810
CLCN6
Chloride channel, voltage-sensitive 6 (868 aa)
     
   
  0.807
MFSD8
Major facilitator superfamily domain containing 8 (522 aa)
           
  0.801
PPT1
Palmitoyl-protein thioesterase 1 (303 aa)
           
  0.798
TPP1
Tripeptidyl peptidase I (569 aa)
     
   
  0.783
ENSLACG00000003477
Battenin; Ceroid-lipofuscinosis, neuronal 3 (406 aa)
           
  0.783
ENSLACG00000011844
Si-ch211-38m6.6 (498 aa)
           
  0.774
IGF2
Insulin-like growth factor 2a (207 aa)
       
      0.712
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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