STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2ZSI3_LATCHUncharacterized protein. (172 aa)    
Predicted Functional Partners:
SETD5
Uncharacterized protein.
 
     0.927
FANCM
FA complementation group M.
    
 0.639
THUMPD3
THUMP domain containing 3.
 
    
 0.503
HUWE1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
   
   0.481
LOC102352539
Uncharacterized protein.
   
 0.472
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 
  0.453
MOSMO
Modulator of smoothened.
      
 0.422
BTBD8
BTB domain containing 8.
      
 0.420
PTRH2
Peptidyl-tRNA hydrolase 2.
      
 0.420
CCDC106
Coiled-coil domain containing 106.
      
 0.418
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.