STRINGSTRING
IFT140 protein (Latimeria chalumnae) - STRING interaction network
"IFT140" - Intraflagellar transport 140 homolog in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IFT140Intraflagellar transport 140 homolog (Chlamydomonas) (1471 aa)    
Predicted Functional Partners:
IFT122
Intraflagellar transport 122 homolog (Chlamydomonas) (1118 aa)
     
  0.939
IFT88
Intraflagellar transport 88 homolog (Chlamydomonas) (833 aa)
     
 
  0.870
IFT80
Intraflagellar transport 80 (780 aa)
     
  0.867
WDR19
WD repeat domain 19 (895 aa)
     
0.856
WDR35
WD repeat domain 35 (1181 aa)
     
  0.843
IFT20
Intraflagellar transport 20 homolog (Chlamydomonas) (132 aa)
     
  0.834
IFT52
Intraflagellar transport 52 homolog (Chlamydomonas) (440 aa)
     
 
  0.828
IFT57
Intraflagellar transport 57 homolog (Chlamydomonas) (428 aa)
     
 
  0.828
IFT46
Intraflagellar transport 46 homolog (Chlamydomonas) (354 aa)
     
 
  0.826
IFT81
Intraflagellar transport 81 homolog (Chlamydomonas) (680 aa)
     
 
  0.815
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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