STRINGSTRING
TBPL1 protein (Latimeria chalumnae) - STRING interaction network
"TBPL1" - TBP-like 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBPL1TBP-like 1 (124 aa)    
Predicted Functional Partners:
GTF2B
General transcription factor IIB (316 aa)
     
  0.970
ENSLACG00000011936
Uncharacterized protein (1561 aa)
     
  0.967
TAF10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa (142 aa)
     
  0.961
TAF2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa (1039 aa)
     
  0.957
GTF2A2
General transcription factor IIA, 2, 12kDa; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation (109 aa)
     
  0.957
TAF7
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa (366 aa)
     
  0.947
STON1
Stonin 1 (1169 aa)
     
  0.943
ENSLACG00000008252
Uncharacterized protein (251 aa)
     
  0.942
BRF1
BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) (515 aa)
     
  0.941
BRF2
BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like (428 aa)
     
  0.941
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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