STRINGSTRING
ATN1 protein (Latimeria chalumnae) - STRING interaction network
"ATN1" - Atrophin 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATN1Atrophin 1 (1171 aa)    
Predicted Functional Partners:
HDAC1
Histone deacetylase 1 (484 aa)
       
 
  0.455
HDAC8
Histone deacetylase 8 (379 aa)
       
 
  0.455
HDAC3
Histone deacetylase 3 (428 aa)
       
 
  0.455
ATXN7L3
Ataxin 7-like 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription (351 aa)
           
  0.429
PAX7
Paired box 7 (420 aa)
       
      0.426
ENSLACG00000016652
Uncharacterized protein (100 aa)
       
      0.426
PAX6
Paired box 6 (463 aa)
       
      0.426
PAX3
Paired box 3 (488 aa)
       
      0.426
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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