STRINGSTRING
DDX58 protein (Latimeria chalumnae) - STRING interaction network
"DDX58" - DEAD in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX58DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 (944 aa)    
Predicted Functional Partners:
TRIM25
Tripartite motif containing 25 (657 aa)
     
  0.943
CYLD
Cylindromatosis (turban tumor syndrome) (959 aa)
     
  0.919
DHX58
DEXH (Asp-Glu-X-His) box polypeptide 58 (680 aa)
     
0.911
TRIM29
Tripartite motif containing 29 (548 aa)
     
  0.906
ATG5
Autophagy related 5; Involved in autophagic vesicle formation (275 aa)
       
  0.893
ENSLACG00000005595
Uncharacterized protein (930 aa)
     
  0.887
ATG12
Autophagy related 12; Ubiquitin-like protein involved in autophagic vesicle formation (145 aa)
       
  0.860
ENSLACG00000011336
Uncharacterized protein (543 aa)
         
    0.800
TRIM47
Tripartite motif containing 47 (634 aa)
         
    0.800
IRF7
Interferon regulatory factor 7 (486 aa)
     
 
  0.781
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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