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STRINGSTRING
OTUD5 protein (Latimeria chalumnae) - STRING interaction network
"OTUD5" - OTU deubiquitinase 5 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTUD5OTU deubiquitinase 5 (534 aa)    
Predicted Functional Partners:
TRAF3
TNF receptor-associated factor 3 (567 aa)
       
  0.935
OTUB1
OTU domain, ubiquitin aldehyde binding 1b (268 aa)
           
  0.783
KXD1
annotation not available (231 aa)
       
      0.783
ENSLACG00000003456
annotation not available (128 aa)
       
      0.783
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2 (270 aa)
           
  0.777
OTULIN
Uncharacterized protein; OTU deubiquitinase with linear linkage specificity (225 aa)
           
  0.767
ENSLACG00000013172
Uncharacterized protein (564 aa)
       
 
  0.691
ENSLACG00000010194
Uncharacterized protein (534 aa)
       
 
  0.691
CYLD
CYLD lysine 63 deubiquitinase; Cylindromatosis (turban tumor syndrome) (959 aa)
     
   
  0.653
VCPIP1
Valosin containing protein (p97)/p47 complex interacting protein 1 (1226 aa)
       
 
  0.636
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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