STRINGSTRING
SPON1 protein (Latimeria chalumnae) - STRING interaction network
"SPON1" - Uncharacterized protein in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPON1Uncharacterized protein (682 aa)    
Predicted Functional Partners:
ADAMTSL4
ADAMTS-like 4 (1086 aa)
     
 
0.615
ADAMTS9
ADAM metallopeptidase with thrombospondin type 1 motif, 9 (1867 aa)
     
 
0.615
TSR3
TSR3, 20S rRNA accumulation, homolog (S. cerevisiae); Probable pre-rRNA processing protein involved in ribosome biogenesis (315 aa)
           
  0.583
ADAMTS12
ADAM metallopeptidase with thrombospondin type 1 motif, 12 (1187 aa)
         
  0.552
POFUT2
Protein O-fucosyltransferase 2 (441 aa)
     
 
    0.549
CSTF3
Cleavage stimulation factor, 3’ pre-RNA, subunit 3, 77kDa (715 aa)
           
  0.549
SLC22A3
Solute carrier family 22 (extraneuronal monoamine transporter), member 3 (365 aa)
     
   
  0.547
GTF2A1
General transcription factor IIA, 1, 19/37kDa (388 aa)
           
  0.546
GGA2
Golgi-associated, gamma adaptin ear containing, ARF binding protein 2 (641 aa)
           
  0.544
B3GALTL
Beta 1,3-galactosyltransferase-like (502 aa)
     
 
    0.543
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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