STRINGSTRING
RAB38 protein (Latimeria chalumnae) - STRING interaction network
"RAB38" - Uncharacterized protein in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB38Uncharacterized protein (112 aa)    
Predicted Functional Partners:
ANKRD27
Ankyrin repeat domain 27 (VPS9 domain) (888 aa)
       
 
  0.624
NCAPG
non-SMC condensin I complex, subunit G (1067 aa)
           
  0.579
HPS6
Hermansky-Pudlak syndrome 6 (802 aa)
     
   
  0.489
GPNMB
Glycoprotein (transmembrane) nmb (607 aa)
     
   
  0.475
RAB23
RAB23, member RAS oncogene family (237 aa)
           
  0.470
SLC5A7
Solute carrier family 5 (choline transporter), member 7 (579 aa)
           
  0.465
ENSLACG00000002010
Uncharacterized protein (566 aa)
           
  0.465
SUGP1
SURP and G patch domain containing 1 (616 aa)
           
  0.429
MYCBP2
MYC binding protein 2, E3 ubiquitin protein ligase (5051 aa)
           
  0.428
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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