STRINGSTRING
ATXN7 protein (Latimeria chalumnae) - STRING interaction network
"ATXN7" - Ataxin 7 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATXN7Ataxin 7 (575 aa)    
Predicted Functional Partners:
ATXN7L3
Ataxin 7-like 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription (351 aa)
       
  0.960
ENSLACG00000005336
Uncharacterized protein (245 aa)
       
  0.880
TADA3
Transcriptional adaptor 3 (312 aa)
       
  0.880
TAF10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa (142 aa)
       
  0.877
ENSLACG00000008252
Uncharacterized protein (251 aa)
       
  0.864
TAF12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa (217 aa)
       
  0.853
TRRAP
Transformation/transcription domain-associated protein (2877 aa)
     
  0.851
ENSLACG00000005793
Uncharacterized protein (975 aa)
     
  0.850
USP3
Ubiquitin specific peptidase 3 (522 aa)
     
  0.840
SUPT3H
Suppressor of Ty 3 homolog (S. cerevisiae) (329 aa)
       
  0.833
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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