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PABPN1 protein (Latimeria chalumnae) - STRING interaction network
"PABPN1" - poly(A) binding protein, nuclear 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PABPN1poly(A) binding protein, nuclear 1 (228 aa)    
Predicted Functional Partners:
ENSLACG00000015927
Uncharacterized protein (588 aa)
     
0.896
FIP1L1
FIP1 like 1 (S. cerevisiae) (532 aa)
     
  0.830
ENSLACG00000011944
Uncharacterized protein (504 aa)
     
  0.830
EIF4G3
Eukaryotic translation initiation factor 4 gamma, 3 (1670 aa)
     
  0.823
EIF4G1
Eukaryotic translation initiation factor 4 gamma, 1 (1640 aa)
     
  0.823
PAPOLA
Uncharacterized protein (735 aa)
     
  0.821
PAPOLG
poly(A) polymerase gamma (743 aa)
     
  0.821
PABPN1L
poly(A) binding protein, nuclear 1-like (cytoplasmic) (99 aa)
   
   
 
0.802
NCOA5
Nuclear receptor coactivator 5 (664 aa)
     
  0.784
YTHDC2
YTH domain containing 2 (1429 aa)
     
  0.771
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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