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DDX21 protein (Latimeria chalumnae) - STRING interaction network
"DDX21" - DEAD in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX21DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 (582 aa)    
Predicted Functional Partners:
GTPBP4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit (634 aa)
     
 
  0.996
PNO1
Partner of NOB1 homolog (S. cerevisiae) (250 aa)
     
 
  0.989
CDC5L
Cell division cycle 5-like (803 aa)
     
 
  0.899
EBNA1BP2
EBNA1 binding protein 2 (146 aa)
     
 
  0.878
GLTSCR2
NOP53 ribosome biogenesis factor; Glioma tumor suppressor candidate region gene 2 (399 aa)
     
      0.856
EIF3D
Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs (542 aa)
     
 
  0.845
DHX36
DEAH-box helicase 36; DEAH (Asp-Glu-Ala-His) box polypeptide 36 (1001 aa)
     
 
  0.820
WDR43
WD repeat domain 43 (679 aa)
     
 
  0.805
DDX56
DEAD (Asp-Glu-Ala-Asp) box helicase 56 (565 aa)
   
 
0.790
RRS1
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly (329 aa)
     
 
  0.786
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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