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WDR6 protein (Latimeria chalumnae) - STRING interaction network
"WDR6" - WD repeat domain 6 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR6WD repeat domain 6 (1116 aa)    
Predicted Functional Partners:
FTSJ1
FtsJ RNA methyltransferase homolog 1 (E. coli); Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (339 aa)
     
 
  0.846
THADA
Thyroid adenoma associated (1186 aa)
     
 
  0.668
FTSJ3
FtsJ homolog 3 (E. coli) (710 aa)
     
 
  0.642
FTSJ2
FtsJ RNA methyltransferase homolog 2 (E. coli) (240 aa)
     
 
  0.576
PWP2
PWP2 periodic tryptophan protein homolog (yeast) (873 aa)
     
        0.558
RRP12
Ribosomal RNA processing 12 homolog (S. cerevisiae) (1121 aa)
     
        0.555
GTPBP4
GTP binding protein 4; Involved in the biogenesis of the 60S ribosomal subunit (634 aa)
     
        0.553
WDR85
WD repeat domain 85 (474 aa)
       
 
  0.520
DAZAP1
DAZ associated protein 1 (440 aa)
     
   
  0.484
TBL3
Transducin (beta)-like 3 (803 aa)
     
        0.465
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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