• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
SPATA18 protein (Latimeria chalumnae) - STRING interaction network
"SPATA18" - Uncharacterized protein in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPATA18Uncharacterized protein; Spermatogenesis associated 18 (325 aa)    
Predicted Functional Partners:
SPATA16
Spermatogenesis associated 16 (608 aa)
           
  0.785
SUOX
Sulfite oxidase (575 aa)
           
  0.772
UNC45B
Unc-45 homolog B (C. elegans) (676 aa)
           
  0.766
TGFBI
Transforming growth factor, beta-induced, 68kDa (659 aa)
     
   
  0.654
SGCB
Sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) (322 aa)
     
   
  0.650
BNIP3L
BCL2/adenovirus E1B 19kDa interacting protein 3-like (208 aa)
           
  0.647
RASAL2
RAS protein activator like 2 (1264 aa)
           
  0.647
SCFD2
Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family (676 aa)
           
  0.639
IRG1
Aconitate decarboxylase 1; Immunoresponsive 1 homolog (mouse) (506 aa)
           
  0.632
SPATA6
Spermatogenesis associated 6 (470 aa)
           
  0.623
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
Server load: low (13%) [HD]