STRINGSTRING
TCF15 protein (Latimeria chalumnae) - STRING interaction network
"TCF15" - Transcription factor 15 (basic helix-loop-helix) in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCF15Transcription factor 15 (basic helix-loop-helix) (163 aa)    
Predicted Functional Partners:
TCF3
Transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) (694 aa)
       
 
  0.609
TCF12
Transcription factor 12 (684 aa)
       
 
  0.609
TCF4
Transcription factor 4 (701 aa)
       
 
  0.609
MKX
Mohawk homeobox (284 aa)
       
 
  0.434
CDHR1
Cadherin-related family member 1 (688 aa)
           
  0.429
PCDH1
Protocadherin 1 (1197 aa)
           
  0.426
ARHGEF19
Rho guanine nucleotide exchange factor (GEF) 19 (920 aa)
           
  0.426
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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