STRINGSTRING
AGPHD1 protein (Latimeria chalumnae) - STRING interaction network
"AGPHD1" - Aminoglycoside phosphotransferase domain containing 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGPHD1Aminoglycoside phosphotransferase domain containing 1 (382 aa)    
Predicted Functional Partners:
AGXT2L2
Alanine-glyoxylate aminotransferase 2-like 2 (462 aa)
 
   
  0.967
AGXT2L1
Alanine-glyoxylate aminotransferase 2-like 1 (524 aa)
 
     
  0.688
AGXT2
Alanine--glyoxylate aminotransferase 2 (516 aa)
 
   
  0.573
PSMA4
Proteasome (prosome, macropain) subunit, alpha type, 4; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH (272 aa)
           
  0.465
SLC18A2
Solute carrier family 18 (vesicular monoamine), member 2 (523 aa)
           
  0.454
ENSLACG00000017825
Uncharacterized protein (1413 aa)
       
      0.437
CLASP2
Cytoplasmic linker associated protein 2 (1303 aa)
       
      0.437
ENSLACG00000000670
Uncharacterized protein (206 aa)
       
      0.412
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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