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KHDRBS3 protein (Latimeria chalumnae) - STRING interaction network
"KHDRBS3" - KH domain containing, RNA binding, signal transduction associated 3 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHDRBS3KH domain containing, RNA binding, signal transduction associated 3 (164 aa)    
Predicted Functional Partners:
PPIE
Peptidylprolyl isomerase E (cyclophilin E); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (302 aa)
     
  0.826
U2AF2
U2 small nuclear RNA auxiliary factor 2 (367 aa)
     
  0.825
CDC40
Cell division cycle 40 homolog (S. cerevisiae) (574 aa)
     
  0.744
PRPF19
PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) (504 aa)
     
  0.721
CHERP
Calcium homeostasis endoplasmic reticulum protein (942 aa)
     
  0.683
KHSRP
KH-type splicing regulatory protein (688 aa)
     
 
  0.622
ENSLACG00000017874
Uncharacterized protein (263 aa)
     
  0.601
SRSF4
Serine/arginine-rich splicing factor 4 (491 aa)
     
  0.601
SRSF5
Serine/arginine-rich splicing factor 5 (367 aa)
     
  0.601
SRSF6
Serine/arginine-rich splicing factor 6 (338 aa)
     
  0.601
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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