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KHDRBS3 protein (Latimeria chalumnae) - STRING interaction network
"KHDRBS3" - Uncharacterized protein in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHDRBS3Uncharacterized protein; KH domain containing, RNA binding, signal transduction associated 3 (164 aa)    
Predicted Functional Partners:
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA (367 aa)
     
 
  0.670
SH3BP5
SH3-domain binding protein 5 (BTK-associated) (278 aa)
           
  0.576
SRSF1
Serine/arginine-rich splicing factor 1 (266 aa)
     
 
  0.575
PRPF40B
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) (894 aa)
     
 
  0.515
PRPF40A
PRP40 pre-mRNA processing factor 40 homolog A (yeast) (902 aa)
     
 
  0.515
MED14
Mediator complex subunit 14 (1445 aa)
     
      0.500
ENSLACG00000013711
Mediator of RNA polymerase II transcription, subunit 25 homolog (yeast) (663 aa)
     
      0.499
MED15
Mediator complex subunit 15 (753 aa)
     
      0.499
MED17
Uncharacterized protein; Mediator complex subunit 17 (640 aa)
     
      0.498
MED31
Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (128 aa)
       
      0.489
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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