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STRINGSTRING
CASP6 protein (Latimeria chalumnae) - STRING interaction network
"CASP6" - Caspase 6, apoptosis-related cysteine peptidase in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CASP6Caspase 6, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family (269 aa)    
Predicted Functional Partners:
ENSLACG00000003502
annotation not available (480 aa)
     
0.954
APAF1
Apoptotic peptidase activating factor 1 (1202 aa)
       
 
  0.924
LMNA
Lamin A; Belongs to the intermediate filament family (678 aa)
       
  0.886
LMNB2
Lamin B2; Belongs to the intermediate filament family (612 aa)
       
  0.884
ENSLACG00000017162
Lamin L3; Belongs to the intermediate filament family (587 aa)
       
  0.830
ACTBL2
Actin, beta-like 2; Belongs to the actin family (376 aa)
       
  0.822
ENSLACG00000018533
annotation not available (381 aa)
       
  0.815
ACTB
annotation not available (376 aa)
       
  0.815
ENSLACG00000001353
Uncharacterized protein; Belongs to the actin family (375 aa)
       
    0.811
ENSLACG00000001071
Uncharacterized protein; Actin, beta 1; Belongs to the actin family (734 aa)
       
    0.811
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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