STRINGSTRING
CASP6 protein (Latimeria chalumnae) - STRING interaction network
"CASP6" - Caspase 6, apoptosis-related cysteine peptidase in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CASP6Caspase 6, apoptosis-related cysteine peptidase (269 aa)    
Predicted Functional Partners:
APAF1
Apoptotic peptidase activating factor 1 (1202 aa)
     
  0.985
BIRC6
Baculoviral IAP repeat containing 6 (4819 aa)
     
  0.782
GABPB1
GA binding protein transcription factor, beta subunit 1 (395 aa)
       
  0.658
GABPB2
GA binding protein transcription factor, beta subunit 2 (396 aa)
       
  0.658
APPL1
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 (709 aa)
       
  0.650
APPL2
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 (484 aa)
       
  0.650
LRRK2
Leucine-rich repeat kinase 2 (2508 aa)
     
  0.640
LRRK1
Leucine-rich repeat kinase 1 (1987 aa)
     
  0.636
BIRC5
Baculoviral IAP repeat containing 5 (139 aa)
       
  0.625
XIAP
Uncharacterized protein (606 aa)
       
  0.625
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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