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STRINGSTRING
SMIM19 protein (Latimeria chalumnae) - STRING interaction network
"SMIM19" - Small integral membrane protein 19 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMIM19Small integral membrane protein 19 (107 aa)    
Predicted Functional Partners:
RNF170
Ring finger protein 170 (178 aa)
           
  0.809
HOOK3
Hook microtubule-tethering protein 3 (709 aa)
           
  0.780
CHRNB3
Cholinergic receptor, nicotinic, beta 3 (neuronal) (459 aa)
           
  0.767
VDAC3
Uncharacterized protein; Voltage-dependent anion channel 3 (161 aa)
     
   
  0.654
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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