STRINGSTRING
C8orf40 protein (Latimeria chalumnae) - STRING interaction network
"C8orf40" - Chromosome 8 open reading frame 40 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C8orf40Chromosome 8 open reading frame 40 (107 aa)    
Predicted Functional Partners:
TMED10
Transmembrane emp24-like trafficking protein 10 (yeast) (207 aa)
       
      0.590
TMEM9
Transmembrane protein 9 (191 aa)
       
      0.590
STIM1
Stromal interaction molecule 1 (662 aa)
       
      0.590
VAPB
VAMP (vesicle-associated membrane protein)-associated protein B and C (242 aa)
       
      0.590
ENSLACG00000006378
Uncharacterized protein (649 aa)
       
      0.590
UBE2M
Ubiquitin-conjugating enzyme E2M (221 aa)
       
      0.590
ENSLACG00000009690
Uncharacterized protein (206 aa)
       
      0.448
TMEM9B
TMEM9 domain family, member B (194 aa)
       
      0.443
ENSLACG00000001221
Uncharacterized protein (109 aa)
       
      0.443
MPST
Mercaptopyruvate sulfurtransferase (301 aa)
       
      0.438
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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