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SMPDL3B protein (Latimeria chalumnae) - STRING interaction network
"SMPDL3B" - Sphingomyelin phosphodiesterase, acid-like 3B in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMPDL3BSphingomyelin phosphodiesterase, acid-like 3B (211 aa)    
Predicted Functional Partners:
ENSLACG00000022167
Uncharacterized protein (470 aa)
       
      0.597
FKBP2
FK506 binding protein 2, 13kDa (141 aa)
       
      0.588
PRUNE
Prune homolog (Drosophila) (498 aa)
       
 
  0.528
ENSLACG00000015503
Uncharacterized protein (241 aa)
       
 
  0.518
FKBP11
FK506 binding protein 11, 19 kDa (131 aa)
       
      0.418
FKBP15
FK506 binding protein 15, 133kDa (1206 aa)
       
      0.418
FKBP14
FK506 binding protein 14, 22 kDa (211 aa)
       
      0.418
FKBP7
FK506 binding protein 7 (215 aa)
       
      0.418
FKBP9
FK506 binding protein 9, 63 kDa (544 aa)
       
      0.418
FKBP10
FK506 binding protein 10, 65 kDa (450 aa)
       
      0.418
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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