STRINGSTRING
LIMD1 protein (Latimeria chalumnae) - STRING interaction network
"LIMD1" - LIM domains containing 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIMD1LIM domains containing 1 (691 aa)    
Predicted Functional Partners:
LARS2
leucyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family (911 aa)
           
  0.593
VASP
Vasodilator-stimulated phosphoprotein (444 aa)
     
 
  0.572
YAP1
Yes-associated protein 1 (324 aa)
       
 
  0.549
UBXN7
UBX domain protein 7 (505 aa)
     
      0.540
STK4
Serine/threonine kinase 4 (488 aa)
     
 
  0.522
PTPN14
Protein tyrosine phosphatase, non-receptor type 14; Belongs to the protein-tyrosine phosphatase family. Non-receptor class subfamily (1086 aa)
     
 
  0.517
LATS2
Large tumor suppressor kinase 2 (1108 aa)
     
 
  0.502
UBA2
Ubiquitin-like modifier activating enzyme 2 (635 aa)
       
 
  0.501
LATS1
Large tumor suppressor kinase 1 (1140 aa)
       
 
  0.495
FLNB
Filamin B, beta (2605 aa)
     
 
  0.481
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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