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NEUROD6 protein (Latimeria chalumnae) - STRING interaction network
"NEUROD6" - Neurogenic differentiation 6b in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEUROD6Neurogenic differentiation 6b (341 aa)    
Predicted Functional Partners:
PDE1C
Phosphodiesterase 1C, calmodulin-dependent 70kDa (440 aa)
     
   
  0.669
ITGA9
Uncharacterized protein; Integrin, alpha 9 (480 aa)
           
  0.667
SATB2
DNA-binding protein SATB; SATB homeobox 2 (762 aa)
     
   
  0.622
CTDSPL
CTD small phosphatase like; CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like (283 aa)
           
  0.615
C1QL1
Complement component 1, q subcomponent-like 1 (274 aa)
     
   
  0.564
C1QL3
Complement C1q like 3; Complement component 1, q subcomponent-like 3a (255 aa)
     
   
  0.564
TBR1
T-box, brain, 1 (673 aa)
     
 
  0.557
CRHR2
Uncharacterized protein; Corticotropin releasing hormone receptor 2; Belongs to the G-protein coupled receptor 2 family (270 aa)
     
   
  0.553
SLC35F6
Solute carrier family 35, member F6 (374 aa)
           
  0.543
ELTD1
Adhesion G protein-coupled receptor L4; EGF, latrophilin and seven transmembrane domain containing 1; Belongs to the G-protein coupled receptor 2 family (644 aa)
     
   
  0.533
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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