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CHD7 protein (Latimeria chalumnae) - STRING interaction network
"CHD7" - Chromodomain helicase DNA binding protein 7 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD7Chromodomain helicase DNA binding protein 7 (3000 aa)    
Predicted Functional Partners:
SSRP1
Structure specific recognition protein 1 (584 aa)
     
  0.914
LEO1
Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) (674 aa)
     
 
  0.869
ASH1L
Ash1 (absent, small, or homeotic)-like (Drosophila) (925 aa)
     
  0.865
SUPT16H
Suppressor of Ty 16 homolog (S. cerevisiae) (1044 aa)
     
  0.850
TOP2A
Topoisomerase (DNA) II alpha 170kDa; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1569 aa)
     
  0.850
TOP2B
Topoisomerase (DNA) II beta 180kDa; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1615 aa)
     
  0.850
RTF1
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) (528 aa)
     
 
  0.799
HDAC3
Histone deacetylase 3 (428 aa)
     
  0.782
ENSLACG00000001043
Annotation not available (136 aa)
       
  0.777
HDAC1
Histone deacetylase 1 (484 aa)
     
  0.777
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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