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CHD7 protein (Latimeria chalumnae) - STRING interaction network
"CHD7" - Chromodomain helicase DNA binding protein 7 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD7Chromodomain helicase DNA binding protein 7 (3000 aa)    
Predicted Functional Partners:
BPTF
Bromodomain PHD finger transcription factor (3013 aa)
     
 
  0.897
PAICS
Uncharacterized protein; Phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase (1029 aa)
   
 
  0.838
PROK2
Prokineticin 2 (159 aa)
           
  0.771
SSRP1
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (584 aa)
     
 
  0.743
FGF8
Fibroblast growth factor 8 b; Belongs to the heparin-binding growth factors family (213 aa)
           
  0.726
SETD1B
SET domain containing 1B (1979 aa)
     
 
  0.697
SETD1A
SET domain containing 1A (1677 aa)
     
 
  0.697
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit; Suppressor of Ty 16 homolog (S. cerevisiae) (1044 aa)
     
 
  0.695
ENSLACG00000018992
Uncharacterized protein; Lysine (K)-specific methyltransferase 2D (2169 aa)
     
 
  0.653
CPA6
Carboxypeptidase A6 (376 aa)
           
  0.646
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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