STRINGSTRING
PPFIA3 protein (Latimeria chalumnae) - STRING interaction network
"PPFIA3" - Protein tyrosine phosphatase, receptor type, f polypeptide in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPFIA3Protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 (1265 aa)    
Predicted Functional Partners:
PTPRF
Protein tyrosine phosphatase, receptor type, F (1693 aa)
     
 
  0.737
PTPRS
Protein tyrosine phosphatase, receptor type, S (1941 aa)
     
 
  0.711
PTPRD
Protein tyrosine phosphatase, receptor type, D (1903 aa)
     
 
  0.711
ENSLACG00000008846
Uncharacterized protein (817 aa)
     
  0.698
VAMP2
Vesicle-associated membrane protein 2 (synaptobrevin 2) (119 aa)
     
 
  0.679
VAMP3
Vesicle-associated membrane protein 3 (138 aa)
     
 
  0.612
STXBP2
Syntaxin binding protein 2 (592 aa)
     
 
  0.584
SNAP25
Synaptosomal-associated protein, 25kDa (206 aa)
     
 
  0.577
PTPRC
Protein tyrosine phosphatase, receptor type, C (830 aa)
     
 
  0.546
RIMS1
Regulating synaptic membrane exocytosis 1 (1125 aa)
     
  0.545
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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