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TSSC1 protein (Latimeria chalumnae) - STRING interaction network
"TSSC1" - EARP complex and GARP complex interacting protein 1 in Latimeria chalumnae
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSSC1EARP complex and GARP complex interacting protein 1; Tumor suppressing subtransferable candidate 1 (387 aa)    
Predicted Functional Partners:
VPS51
VPS51, GARP complex subunit; Vacuolar protein sorting 51 homolog (S. cerevisiae) (756 aa)
     
 
  0.933
CCDC132
VPS50, EARP/GARPII complex subunit; Coiled-coil domain containing 132 (964 aa)
     
 
  0.917
VPS54
VPS54, GARP complex subunit; Vacuolar protein sorting 54 homolog (S. cerevisiae) (980 aa)
     
 
  0.895
MRPL37
Mitochondrial ribosomal protein L37 (427 aa)
           
  0.810
RNASEH1
Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (310 aa)
     
   
  0.790
RNF144A
Ring finger protein 144A (303 aa)
     
   
  0.789
VPS53
VPS53, GARP complex subunit; Vacuolar protein sorting 53 homolog (S. cerevisiae) (831 aa)
     
 
  0.785
CMPK2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial (381 aa)
           
  0.781
CLPB
Uncharacterized protein; ClpB caseinolytic peptidase B homolog (E. coli) (425 aa)
     
   
  0.780
COLEC11
Collectin sub-family member 11 (274 aa)
           
  0.779
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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