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CIRH1A protein (Latimeria chalumnae) - STRING interaction network
"CIRH1A" - Cirrhosis, autosomal recessive 1A in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIRH1ACirrhosis, autosomal recessive 1A (cirhin) (697 aa)    
Predicted Functional Partners:
UTP15
UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae) (524 aa)
     
  0.998
WDR43
WD repeat domain 43 (679 aa)
     
  0.997
UTP6
UTP6, small subunit (SSU) processome component, homolog (yeast) (597 aa)
     
  0.996
PWP2
PWP2 periodic tryptophan protein homolog (yeast) (873 aa)
     
  0.996
WDR36
WD repeat domain 36 (865 aa)
     
  0.995
TBL3
Transducin (beta)-like 3 (803 aa)
     
  0.995
WDR3
WD repeat domain 3 (944 aa)
     
  0.995
NOP14
NOP14 nucleolar protein homolog (yeast) (872 aa)
     
  0.994
WDR46
WD repeat domain 46 (614 aa)
     
  0.994
RRP9
Ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) (495 aa)
     
  0.993
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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