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STRINGSTRING
RAB43 protein (Latimeria chalumnae) - STRING interaction network
RAB43, member RAS oncogene family in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB43RAB43, member RAS oncogene family (213 aa)    
Predicted Functional Partners:
KDM5B
Lysine (K)-specific demethylase 5B (1659 aa)
     
 
  0.648
TRAPPC1
Trafficking protein particle complex 1 (145 aa)
     
 
  0.616
TRAPPC5
Trafficking protein particle complex 5 (188 aa)
     
 
  0.609
TRAPPC4
Trafficking protein particle complex 4 (219 aa)
       
 
  0.605
SGSM3
Small G protein signaling modulator 3 (356 aa)
     
 
  0.585
ARF6
Uncharacterized protein; ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family (176 aa)
     
 
  0.567
ENSLACG00000004676
ADP-ribosylation factor 6b; Belongs to the small GTPase superfamily. Arf family (175 aa)
     
 
  0.567
TRAPPC3L
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi (197 aa)
     
 
  0.567
TRAPPC3
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi (180 aa)
     
 
  0.567
TBC1D9B
TBC1 domain family, member 9B (with GRAM domain) (1228 aa)
     
 
  0.567
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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