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TRIM55 protein (Latimeria chalumnae) - STRING interaction network
"TRIM55" - Tripartite motif containing 55 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM55Tripartite motif containing 55 (531 aa)    
Predicted Functional Partners:
SRSF10
Serine/arginine-rich splicing factor 10 (252 aa)
       
      0.499
ENSLACG00000001210
Septin 7 (392 aa)
       
      0.499
PRPF8
PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) (2213 aa)
       
      0.499
SAP18
Sin3A-associated protein, 18kDa (153 aa)
       
      0.499
SRSF11
Serine/arginine-rich splicing factor 11 (460 aa)
       
      0.499
USP39
Ubiquitin specific peptidase 39 (522 aa)
       
      0.499
NBR1
Neighbor of BRCA1 gene 1 (1005 aa)
       
 
  0.458
ENSLACG00000009728
Uncharacterized protein (3251 aa)
       
 
  0.441
ENSLACG00000004309
Uncharacterized protein (347 aa)
       
 
  0.441
ENSLACG00000018688
Uncharacterized protein (206 aa)
       
      0.438
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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