STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRERF1Transcriptional regulating factor 1. (1190 aa)    
Predicted Functional Partners:
DNTTIP1
Deoxynucleotidyltransferase terminal interacting protein 1.
    
 
 0.784
KCTD19
Potassium channel tetramerization domain containing 19.
      
 0.686
ELMSAN1
ELM2 and Myb/SANT domain containing 1.
    
 
0.533
MAP3K8
Mitogen-activated protein kinase kinase kinase 8.
      
 0.471
ZBTB42
Zinc finger and BTB domain containing 42.
    
 
 0.426
MAP3K1
Mitogen-activated protein kinase kinase kinase 1.
      
 0.426
ZBTB18
Zinc finger and BTB domain containing 18.
    
 
 0.426
CCDC51
Coiled-coil domain containing 51.
      
 0.422
CHST2
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.420
MANF
Mesencephalic astrocyte derived neurotrophic factor.
      
 0.420
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.