STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSPAN3Tetraspanin. (253 aa)    
Predicted Functional Partners:
RCN2
Reticulocalbin 2.
   
  
 0.750
SCAPER
S-phase cyclin A associated protein in the ER.
      
 0.715
CD82
Tetraspanin.
      
0.685
PHF21A
PHD finger protein 21A.
      
 0.668
LOC102351310
Adenine phosphoribosyltransferase.
      
 0.666
IGSF8
Immunoglobulin superfamily member 8.
    
 
 0.606
GJB3
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.572
PEAK1
Pseudopodium enriched atypical kinase 1.
      
 0.569
PTGFRN
Prostaglandin F2 receptor inhibitor.
    
 
 0.565
TSG101
Tumor susceptibility 101.
      
 0.556
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.